Progress and next steps in agent-based modeling of the hallmarks of cancer
Healthy and diseased tissues—including cancer—are adaptive ecosystems that are driven by individual cell behaviors, interactions, and biophysical constraints. Many key cell behaviors and interactions—particularly tumor-immune interactions—are fundamentally discrete, requiring discrete modeling approaches. In this talk, we introduce agent-based modeling (ABM) in cancer biology, highlight major on-lattice and off-lattice approaches, and explore examples in cancer hypoxia and cancer immunology using PhysiCell: an open source ABM framework (and software ecosystem) developed by my group. We close with next-generation ABM approaches to accelerate model development, improve multidisciplinary communication, increase access to mathematical modeling outside the traditional math/physics/CS community, and improve reproducibility and reusability of agent-based models.